PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.132830.1
Common NameCsa_2G009480, LOC101222794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 422aa    MW: 44220.4 Da    PI: 6.5692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.132830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12228273555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Cucsa.132830.1 228 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 273
                     99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.72E-13221277No hitNo description
SuperFamilySSF474591.23E-16221281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16225280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MRLTNSLPDL HTHRRNPPQE TDASQLHHHH HQLQTSLFHP STFSSDDFLD QILSTVPSPW  60
ELPPGLPSQP LPPSNPDNVE FHVGDTTPAA KMAMSLLQQQ LLMSRGIVPA SAGDDCGLLP  120
MPGNNVVEVD GSSSSSFKCP NPTDHGSVVP SLFNEFAGFL NSTGPGSQNQ NQSQGNSNSQ  180
IPNFGGPVSA STPPPAGPSS CGGAAAAAAP GQPRQRVRAR RGQATDPHSI AERLRRERIA  240
ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS VSRLGGATAA MPSRLPDLST  300
EGGTECNQSN GTNGASGQTS TGAPSSNDAM TVTEHQVVKL MEEDMGSAMQ YLQGKGLCLM  360
PISLATAIST ATCHSRPITA SKGGGDPPTS PSLSALTVQS TALGNGTVDK PVRDTLSVSR  420
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6887271e-177LN688727.1 Cucumis melo genomic scaffold, unassembled_sequence36141.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139396.10.0PREDICTED: transcription factor bHLH66-like
TrEMBLA0A0A0LFE40.0A0A0A0LFE4_CUCSA; Uncharacterized protein
STRINGVIT_11s0037g00040.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-64LJRHL1-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]